PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe7G065100.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family LBD
Protein Properties Length: 235aa    MW: 24755.3 Da    PI: 7.825
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe7G065100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260125.52.6e-3918117199
             DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlk 91 
                        +C aCk+lrrkC+ +C++apyf +eq + +fa+vhk+FGasnv+kll ++p ++r da+ +++yeA+ar+rdPvyG+v+ i++lqqq+ +l+
  Aqcoe7G065100.1.p  18 PCGACKFLRRKCVVGCIFAPYFDSEQgATHFAAVHKVFGASNVSKLLLHIPVHKRLDAVVTICYEAQARLRDPVYGCVANIFALQQQVVNLQ 109
                        7***********************9989**************************************************************** PP

             DUF260  92 aelallke 99 
                        ael++l++
  Aqcoe7G065100.1.p 110 AELSYLQT 117
                        ***99875 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089122.57417119IPR004883Lateral organ boundaries, LOB
PfamPF031951.1E-3818116IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010089Biological Processxylem development
GO:0010311Biological Processlateral root formation
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 235 aa     Download sequence    Send to blast
MSASSSTSGG GGGAGAGPCG ACKFLRRKCV VGCIFAPYFD SEQGATHFAA VHKVFGASNV  60
SKLLLHIPVH KRLDAVVTIC YEAQARLRDP VYGCVANIFA LQQQVVNLQA ELSYLQTYLA  120
SLELPTPPPA PPPPMLITPP PLSIADLPSA STMPANFDLS TLFDPLMQQS WTLQQRQMDF  180
RQYGAGRNPT DNPLSSGGDL QALARELLQR QGTTASTTHQ PATSAAPPPP PLSG*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00314DAPTransfer from AT2G45420Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010276364.11e-100PREDICTED: LOB domain-containing protein 30-like
SwissprotO221312e-77LBD18_ARATH; LOB domain-containing protein 18
TrEMBLA0A0D2MZ411e-99A0A0D2MZ41_G
STRINGVIT_15s0048g00830.t011e-96(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45420.12e-64LOB domain-containing protein 18